PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.003G009400.1
Common NameB456_003G009400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 316aa    MW: 35296.3 Da    PI: 9.0132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.003G009400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.5e-104092154
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                        r++ +  rE+ RRdr+N+ f eL   l +    ++ +K++Ka+iL  A++ + +L
  Gorai.003G009400.1 40 RKVQKADREKLRRDRLNEQFLELGNTLGNvY--PDRPKNDKATILVGAIQMLEDL 92
                        5677889**********************87..58888************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.2113992IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-74092IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1240119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.15E-64097No hitNo description
Gene3DG3DSA:4.10.280.102.3E-1140115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-64598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNHQRKPNDF SEAIAADLGT SNPESRQRLE MEAEDPIAAR KVQKADREKL RRDRLNEQFL  60
ELGNTLGNVY PDRPKNDKAT ILVGAIQMLE DLTAEVKRLK AERSSLTEES RELTQENNEL  120
REEKASVKAN IVNLTVQYQQ RRMMMFPWTG IDSSSVMAPP YPYPVPLPVT TGPIVMHPSL  180
QPYPFFGNHN PGAINNPCST FMPYSTMTSN PLIEQPSSQY TSSSHTSSKR DSKSKLADHQ  240
RGSNRESNGS NDVRTKLELK NPGSSTNEDL SARKKKGKEE KKDRTNGCSL NCYSSSQDLK  300
DSSSNSVNDV SKSNK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6207191e-33JX620719.1 Gossypium hirsutum clone NBRI_GE67032 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469334.10.0PREDICTED: transcription factor bHLH121-like
SwissprotQ9LT233e-64BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A0D2REQ40.0A0A0D2REQ4_G
STRINGVIT_04s0023g03430.t011e-106(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.11e-52bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]